PyscesToolbox Documentation

Contents:

• Introduction
• Installation
  • Abbreviated requirements
  • Installation on Anaconda
    • Virtual environments
    • Enabling widgets
  • Alternative: direct pip-based install
    • Virtual environments
    • Enabling widgets
  • Maxima
    • Windows
    • macOS (Mac OS X)
    • Linux
• Basic Usage
  • Starting a PySCeSToolbox session
  • Downloading interactive Jupyter notebooks
  • Syntax
  • Saving and Default Directories
  • Plotting and Displaying Results
    • Data2D
    • ScanFig
    • Tables
  • Graphic Representation of Metabolic Networks
    • Features
    • Usage Example
• RateChar
  • Features
  • Usage and Feature Walkthrough
    • Workflow
    • Object Instantiation
    • Parameter Scan
    • Accessing Results
    • Plotting Results
    • Saving
• Symca
  • Features
  • Usage and feature walkthrough
    • Workflow
    • Object instantiation
    • Generating symbolic control coefficient expressions
    • Accessing control coefficient expressions
    • Dynamic value updating
    • Control pattern graphs
    • Parameter scans
    • Fixed internal metabolites
    • Saving results
    • Saving/loading sessions
• Thermokin
  • Features
  • Usage and feature walkthrough
    • Workflow
    • Rate term file syntax
    • Object instantiation
    • Accessing results
    • Dynamic value updating
    • Parameter scans
    • Saving results
• Included Files
  • Models
    • example_model.psc
    • lin4_fb.psc
  • Example Notebooks
• References
• Module reference
  • psctb package
    • Subpackages
    • Module contents

Indices and tables

• Index

• Module Index

• Search Page